Publications
2024
Mazéas L, Bouguerba-Collin A, Cock JM, Denoeud F, Godfroy O, Brillet-Guéguen L, Barbeyron T, Lipinska AP, Delage L, Corre E, et al. 2024. Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history. BMC Genomics 25: 950.
Luthringer R, Raphalen M, Guerra C, Colin S, Martinho C, Zheng M, Hoshino M, Badis Y, Lipinska AP, Haas FB, et al. 2024. Repeated co-option of HMG-box genes for sex determination in brown algae and animals. Science 383: eadk5466.
Denoeud F, Godfroy O, Cruaud C, Heesch S, Nehr Z, Tadrent N, Couloux A, Brillet-Gueguen L, Delage L, Dean D, et al. 2024. Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. : 2024.02.19.579948.
Barrera-Redondo J*, Lipinska AP*, Liu P, Dinatale E, Cossard G, Bogaert K, Hoshino M, Avia K, Leiria G, Avdievich E, et al. 2024. Origin and evolutionary trajectories of brown algal sex chromosomes. : 2024.01.15.575685.
2023
Reifová R, Ament-Velásquez SL, Bourgeois Y, Coughlan J, Kulmuni J, Lipinska AP, Okude G, Stevison L, Yoshida K, Kitano J. 2023. Mechanisms of Intrinsic Postzygotic Isolation: From Traditional Genic and Chromosomal Views to Genomic and Epigenetic Perspectives. Cold Spring Harbor Perspectives in Biology: a041607.
Krasovec M, Hoshino M, Zheng M, Lipinska AP, Coelho SM. 2023. Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle. Molecular Biology and Evolution 40: msad105.
Lipinska AP, Krueger-Hadfield SA, Godfroy O, Dittami S, Ayres-Ostrock L, Bonthond G, Brillet-Guéguen L, Coelho S, Corre E, Cossard G, et al. 2023. The Rhodoexplorer Platform for Red Algal Genomics and Whole Genome Assemblies for Several Gracilaria Species. : 2023.03.20.533491.
Borg M, Krueger-Hadfield SA, Destombe C, Collén J, Lipinska AP, Coelho SM. 2023. Red macroalgae in the genomic era. New Phytologist 240: 471–488.
Hatchett WJ, Jueterbock AO, Kopp M, Coyer JA, Coelho SM, Hoarau G, Lipinska AP. 2023. Evolutionary dynamics of sex-biased gene expression in a young XY system: insights from the brown alga genus Fucus. New Phytologist 238: 422–437.
2022
Manat G, Fanuel M, Jouanneau D, Jam M, Mac-Bear J, Rogniaux H, Mora T, Larocque R, Lipinska AP, Czjzek M, et al. 2022. Specificity of a β-porphyranase produced by the carrageenophyte red alga Chondrus crispus and implications of this unexpected activity on red algal biology. Journal of Biological Chemistry: 102707.
Cossard GG, Godfroy O, Nehr Z, Cruaud C, Cock JM, Lipinska AP, Coelho SM. 2022. Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems. Nature Ecology & Evolution 6: 579–589.
Gueno J, Borg M, Bourdareau S, Cossard G, Godfroy O, Lipinska AP, Tirichine L, Cock JM, Coelho SM. 2022. Chromatin landscape associated with sexual differentiation in a UV sex determination system. Nucleic Acids Research 50: 3307–3322.
2021
Müller DG, Gaschet E, Godfroy O, Gueno J, Cossard G, Kunert M, Peters AF, Westermeier R, Boland W, Cock JM, Lipinska AP, Coelho SM. 2021. A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system. The New Phytologist 232: 252–263.
2020
Lipinska AP, Collén J, Krueger-Hadfield SA, Mora T, Ficko-Blean E. 2020. To gel or not to gel: differential expression of carrageenan-related genes between the gametophyte and tetasporophyte life cycle stages of the red alga Chondrus crispus. Scientific Reports 10: 11498.
Dittami SM, Corre E, Brillet-Guéguen L, Lipinska AP, Pontoizeau N, Aite M, Avia K, Caron C, Cho CH, Collén J, et al. 2020. The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga. Marine Genomics: 100740.
2019
Nègre D, Aite M, Belcour A, Frioux C, Brillet-Guéguen L, Liu X, Bordron P, Godfroy O, Lipinska AP, Leblanc C, et al. 2019. Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus. Antioxidants 8.
Mignerot L, Avia K, Luthringer R, Lipinska AP, Peters AF, Cock JM, Coelho SM. 2019. A key role for sex chromosomes in the regulation of parthenogenesis in the brown alga Ectocarpus. PLoS Genetics 15.
Lipinska AP, Serrano-Serrano ML, Cormier A, Peters AF, Kogame K, Cock JM, Coelho SM. 2019. Rapid turnover of life-cycle-related genes in the brown algae. Genome Biology 20: 35.
Arun A, Coelho SM, Peters AF, Bourdareau S, Pérès L, Scornet D, Strittmatter M, Lipinska AP, Yao H, Godfroy O, et al. 2019. Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae (S McCormick and CS Hardtke, Eds.). eLife 8: e43101.
2018
Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG. 2018. UV Chromosomes and Haploid Sexual Systems. Trends in Plant Science 23: 794–807.
Avia K*, Lipinska AP*, Mignerot L, Montecinos AE, Jamy M, Ahmed S, Valero M, Peters AF, Cock JM, Roze D, et al. 2018. Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus. Genes 9: 286.
2017
Lipinska AP, Toda NRT, Heesch S, Peters AF, Cock JM, Coelho SM. 2017. Multiple gene movements into and out of haploid sex chromosomes. Genome Biology 18: 104.
Cock JM, Liu F, Duan D, Bourdareau S, Lipinska AP, Coelho SM, Tarver JE. 2017. Rapid evolution of microRNA loci in the brown algae. Genome Biology and Evolution 9: 740–749.
Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau M-M, et al. 2017. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytologist 214: 219–232.
Godfroy O, Uji T, Nagasato C, Lipinska AP, Scornet D, Peters AF, Avia K, Colin S, Mignerot L, Motomura T. 2017. DISTAG/TBCCd1 is required for basal cell fate determination in Ectocarpus. The Plant Cell 29: 3102–3122.
Macaisne N, Liu F, Scornet D, Peters AF, Lipinska A, Perrineau M-M, Henry A, Strittmatter M, Coelho SM, Cock JM. 2017. The Ectocarpus IMMEDIATE UPRIGHT gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes. Development 144: 409–418.
2016
Lipinska AP, Van Damme EJM, De Clerck O. 2016. Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus. BMC Evolutionary Biology 16: 5.
2015
Luthringer R*, Lipinska AP*, Roze D, Cormier A, Macaisne N, Peters AF, Cock JM, Coelho SM. 2015. The Pseudoautosomal Regions of the U/V Sex Chromosomes of the Brown Alga Ectocarpus Exhibit Unusual Features. Molecular Biology and Evolution 32: 2973–2985.
Lipinska A*, Cormier A*, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM, Coelho SM. 2015. Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus. Molecular Biology and Evolution: msv049.
Lipinska AP, Ahmed S, Peters AF, Faugeron S, Cock JM, Coelho SM. 2015. Development of PCR‐Based Markers to Determine the Sex of Kelps. PLOS ONE 10: e0140535.
2013
Lipinska AP, D’hondt S, Damme EJV, Clerck OD. 2013. Uncovering the genetic basis for early isogamete differentiation: a case study of Ectocarpus siliculosus. BMC Genomics 14: 909.
2010
Dyrda A, Cytlak U, Ciuraszkiewicz A, Lipinska A, Cueff A, Bouyer G, Egée S, Bennekou P, Lew VL, Thomas SL. 2010. Local membrane deformations activate Ca2+-dependent K+ and anionic currents in intact human red blood cells. PloS one 5: e9447.